<!--Uses Treeview concept from http://www.quantumsoftware.com.au/Support/KB/Article.aspx?ID=112-->
<html>

<head>
<title> Group ICA Toolbox Help </title>
<meta http-equiv="Content-Type" content="HTML, DHTML, CSS, XML, XHTML, JavaScript, VBScript; charset=iso-8859-1">
<link rel="stylesheet" type="text/css" href="./style.css">

<!-- Include Javascript -->

<script type="text/javascript">

/* List tree */
function listTree(section)
{
	if(document.getElementById(section).style.display == 'none')
	{
		document.getElementById(section).style.display = 'inline';
		document.getElementById('img' + section).src = 'minus.gif';
	}
	else
	{
		document.getElementById(section).style.display = 'none';
		document.getElementById('img' + section).src = 'plus.gif';
	}
}
/* End for listing tree */

</script>

<!-- End for including Javascript -->

</head>


<body>

<h4> Table Of Contents </h4>

<p>

<!-- Introduction -->
<a href="javascript:listTree('Introduction');">
<img align="top" src="./plus.gif" border="0" id="imgIntroduction">
</a>
<a href="icatb_introduction.htm" onclick="listTree('Introduction');" target="rightframe"> 
Introduction </a>

<font id="Introduction" style="display: none"> <br>

<!-- New Features -->
&nbsp;&nbsp;&nbsp;&nbsp;
<img align ="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="icatb_new_features.htm" target="rightframe">New Features </a> <br> 
<!-- End for new features -->

<!-- System Requirements -->
&nbsp;&nbsp;&nbsp;&nbsp;
<img align ="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="icatb_system_requirements.htm" target="rightframe">System Requirements</a><br>
<!-- End for system requirements -->

<!-- MEX files -->
&nbsp;&nbsp;&nbsp;&nbsp;
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="icatb_compile_mex.htm" target="rightframe">MEX Files</a><br>
<!-- End for MEX files -->



<!-- Project Web Page -->
&nbsp;&nbsp;&nbsp;&nbsp;
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="icatb_project_webpage.htm" target="rightframe">Project Web Page</a>
<!-- End for project web page -->

</font>

<!-- End for introduction -->

<br>

<!-- GIFT Toolbox -->
<a href="javascript:listTree('GIFT');">

<img align="top" src="./plus.gif" border="0" id="imgGIFT" />
</a>
<a href ="gift/icatb_getting_started.htm" onclick="listTree('GIFT');" target="rightframe">
Group ICA of fMRI Toolbox (GIFT) </a>

<font id="GIFT" style="display: none"><br />
&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Setup ICA -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_setup_ica.htm" target="rightframe">Setup ICA</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Run Analysis -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_run_analysis.htm" target="rightframe">Run Analysis</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Analysis Info -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_analysis_info.htm" target="rightframe">Analysis Info</a><br />

<!-- Visualization Methods -->
<a href="javascript:listTree('VisualizationMethods');">
&nbsp;&nbsp;&nbsp;&nbsp;
<img align="top" src="./plus.gif" border="0" id="imgVisualizationMethods" />&nbsp;&nbsp;&nbsp;
</a><a href="gift/icatb_visualization_options.htm" onclick="listTree('VisualizationMethods');" target="rightframe">
Visualization Methods</a>

<font  id="VisualizationMethods" style="display: none"><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Display GUI -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_displayGUI.htm" target="rightframe">Display GUI</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Component Explorer -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_component_explorer.htm" target="rightframe">Component 
Explorer</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Subject Component Explorer -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_subject_explorer.htm" target="rightframe">Subject Component 
Explorer</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Ortho viewer -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_ortho_viewer.htm" target="rightframe">Ortho Viewer</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;


<!-- Composite Viewer -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_composite_viewer.htm" target="rightframe">Composite Viewer</a>

</font>
<!-- End for Visualization Methods -->

<br />

<!-- Sorting Components -->
<a href="javascript:listTree('SortingComp');">
&nbsp;&nbsp;&nbsp;&nbsp;
<img align="top" src="./plus.gif" border="0" id="imgSortingComp" />&nbsp;&nbsp;&nbsp;
</a>

<!-- Types of sorting -->
<a href="gift/icatb_sorting_components.htm" onclick="listTree('SortingComp');" target="rightframe"> 
Sorting Components </a>
<font  id="SortingComp" style="display: none"><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Temporal Sorting -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_temporal_sorting.htm" target="rightframe">Temporal Sorting</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Spatial Sorting -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_spatial_sorting.htm" target="rightframe">Spatial Sorting</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Stats on images and timecourses -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_statistical_testing.htm" target="rightframe">Stats On Images 
and Timecourses</a>

</font>

<!-- End for Sorting Components -->

<br />
<!-- Utilities -->
<a href="javascript:listTree('Utilities');">
&nbsp;&nbsp;&nbsp;&nbsp;
<img align="top" src="./plus.gif" border="0" id="imgUtilities">&nbsp;&nbsp;&nbsp;
</a>

<font class =""> Utilities </font>
<br />
<font  id="Utilities" style="display: none">
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Removing Artifacts -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_remove_components.htm" target="rightframe">Removing 
Component(s)</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;


<!-- ICASSO -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_icasso.htm" target="rightframe">ICASSO</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- ASCII To SPM.MAT -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_ascii_spm.htm" target="rightframe">ASCII To SPM.MAT</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Event Average -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_event_average.htm" target="rightframe">Event Average</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Calculate Stats -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_calculate_stats.htm" target="rightframe">Calculate Stats</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- SPM stats -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_spm_stats.htm" target="rightframe">SPM Stats
</a> <br/>


&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
<!-- Spectral Group Compare -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_spectral_group_compare.htm" target="rightframe">Spectral 
Group Compare</a> <br/>

&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
<!-- Stats on beta weights -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_stats_on_beta_weights.htm" target="rightframe">Stats On Beta 
Weights</a> <br/>

&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
<!-- Write Talairach tables -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_write_talairach.htm" target="rightframe">Write Taliarch 
tables</a> <br/>

&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
<!-- Single trial amplitudes -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_single_trial_amps.htm" target="rightframe">Single Trial 
Amplitudes</a> <br/>

&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
<!-- Z-shift -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_z_shift.htm" target="rightframe">Z-shift</a> <br/>

&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;
<!-- Percent Variance -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_percent_variance.htm" target="rightframe">Percent Variance</a> <br/>



</font>
<!-- End for Utilities -->

<!-- Batch script -->
&nbsp;&nbsp;&nbsp;&nbsp;
<img align="top" src="./treeview.gif" border="0" id="imgBatchAnalysis">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_batch_analysis.htm" target="rightframe"> Batch Script </a> <br>
<!-- End for getting started -->

<!-- Appendix -->
&nbsp;&nbsp;&nbsp;&nbsp;
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_appendix.htm" target="rightframe">Appendix</a><br>

<!-- References -->
&nbsp;&nbsp;&nbsp;&nbsp;
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="gift/icatb_references.htm" target="rightframe">References</a>


</font>
<!-- End for GIFT Toolbox -->

<br>

<!-- EEGIFT Toolbox -->
<a href="javascript:listTree('EEGIFT');">

<img align="top" src="./plus.gif" border="0" id="imgEEGIFT">
</a>
<a href ="eegift/icatb_eeg_getting_started.htm" onclick="listTree('EEGIFT');" target="rightframe">
Group ICA of EEG Toolbox (EEGIFT) </a>

<font  id="EEGIFT" style="display: none"><br />
&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Import Data -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="eegift/icatb_eeg_import_data.htm" target="rightframe">Import Data</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;


<!-- Setup ICA -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="eegift/icatb_eeg_setup_ica.htm" target="rightframe">Setup ICA</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Run Analysis -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="eegift/icatb_eeg_run_analysis.htm" target="rightframe">Run Analysis</a><br />

<!-- Display GUI -->
<a href="javascript:listTree('EEGDisplay');">
&nbsp;&nbsp;&nbsp;&nbsp;
<img align="top" src="./plus.gif" border="0" id="imgEEGDisplay" />&nbsp;&nbsp;&nbsp;
</a><a href="eegift/icatb_eeg_displayGUI.htm" onclick="listTree('EEGDisplay');" target="rightframe">
Display GUI</a><br>

<font id="EEGDisplay" style="display: none">
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Component Explorer -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="eegift/icatb_eeg_component_explorer.htm" target="rightframe">Component 
Explorer</a><br />
&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;

<!-- Subject Component Explorer -->
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="eegift/icatb_eeg_subject_explorer.htm" target="rightframe">Subject 
Component Explorer</a> <br>

</font>

<!-- Batch Script -->
&nbsp;&nbsp;&nbsp;&nbsp;
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="eegift/icatb_eeg_batch_analysis.htm" target="rightframe">Batch Script</a> <br>

<!-- Appendix -->
&nbsp;&nbsp;&nbsp;&nbsp;
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="eegift/icatb_eeg_appendix.htm" target="rightframe">Appendix</a> <br>

<!-- References -->
&nbsp;&nbsp;&nbsp;&nbsp;
<img align="top" src="./treeview.gif" border="0">&nbsp;&nbsp;&nbsp;
<a href="eegift/icatb_eeg_references.htm" target="rightframe">References</a>


</font>

</p>

</body>

</html>
